SubtiBank SubtiBank
Version comparison:

2017-8-11 16:0:32025-05-23 15:03:12

_ec

description

MarR/DUF24 family transcription repressor of the catD-catE operon

[SW|MarR family|MarR/DUF24 family] transcription repressor of the [[gene|catD]]-[[gene|catE]] operon

locus

BSU33680

BSU_33680

proteinLength

236

108

geneLength

708

327

product

MarR/DUF24 family transcription repressor

[SW|MarR family|MarR/DUF24 family] transcription repressor

outlinks

bsu

BSU33680

BSU_33680

Gene

Coordinates

3,457,615 → 3,457,941

3,457,615 3,457,941

The protein

Catalyzed reaction/ biological activity

[[MarR/DUF24 family]] transcription repressor of the'' [[gene|catD]]-[[gene|catE]]'' operon [Pubmed|20639328]

[SW|MarR family|MarR/DUF24 family] transcription repressor of the [[gene|catD]]-[[gene|catE]] operon [Pubmed|20639328]

The protein

Protein family

[[MarR/DUF24 family]]

[SW|MarR family|MarR/DUF24 family]

The protein

Paralogous protein(s)

[[protein|YodB]], [[protein|YdzF]]

[[this]]

The protein

Modification

in responsse to the presence of diamides or quinones, Cys-7 forms intermolecular disulfide bonds, this results in loss of DNA-bindig ability (induction of ''[[gene|catD]]-[[gene|catE]]'') [Pubmed|20639328]

in responsse to the presence of diamides or quinones, Cys-7 forms intermolecular disulfide bonds, this results in loss of DNA-bindig ability (induction of [[gene|catD]]-[[gene|catE]]) [Pubmed|20639328]

Biological materials

Mutant

MGNA-A451 (yvaP::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/451 NBRP B. subtilis, Japan]

MGNA-A451 (yvaP::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/451 NBRP B. subtilis, Japan]

BKE33680 ([[gene|catR]]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE33680 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATACTTTTCACCTCGTCTG, downstream forward: _UP4_TAATTGCTAAAATGGTTCTG

BKK33680 ([[gene|catR]]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK33680 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATACTTTTCACCTCGTCTG, downstream forward: _UP4_TAATTGCTAAAATGGTTCTG

Labs working on this gene/protein

[SW|Haike Antelmann],University of Greifswald, Germany

References

18282125

18282125, 27531959

The protein

[SW|Domains]

[SW|HTH hxlR-type domain] (aa 7-106) (according to UniProt)

The protein

Structure

[PDB|5HS7] ([[protein|YodB]], 46% identity) [Pubmed|27531959]

labs

[SW|Haike Antelmann],University of Greifswald, Germany